rs3149836 SNP Detail

Summary

• ID
  rs3149836
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118528003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTCT AACACATGCT GGGGGCCCTC
  R
  AAGTTTCTGA GTTTCTCCCA TACTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147310078	ENSMUSSNP7166778	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320471354	CHEV_2_118523258	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs3149836					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118528003 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd63	ankyrin repeat domain 63			1581 bp downstream
Cpgi12087	CpG island 12087			814 bp distal
Pak6	p21 (RAC1) activated kinase 6			mRNA-UTR
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			1334 bp distal
Rr563300	regulatory region 563300			1639 bp distal
Rr563301	regulatory region 563301			709 bp distal
Rr563302	regulatory region 563302			172 bp proximal