rs3149608 SNP Detail

Summary

• ID
  rs3149608
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118592565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCTGTGAGCA CAGTCTGGAA TGAGAGTTAA AAATGGCTCT
  GGCAGCCGAA CCTGCCGTGA CTGGGAAGCT GCCAGGGGAT TCAGGAGGTC GAGGGGGGAC
  W
  CTTTGCCTCC CAAATCTAGA ACCACACACA CAGAGACAGG CTTTAGCTTG GTTCTGGCCT
  CCCAGGCACC GGACCCCACT CCCTAAGCCT GTGCCCAGT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45377719	mCV22541280	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	A	T
ss147311969	ENSMUSSNP6812382	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs3149608					SNP	T	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118592565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc9b	coiled-coil domain containing 9B			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr367276	regulatory region 367276			520 bp upstream
Rr563323	regulatory region 563323			700 bp distal
Rr563324	regulatory region 563324			578 bp distal
Rr563325	regulatory region 563325			290 bp proximal
Rr563326	regulatory region 563326			567 bp proximal
Tssr25793	transcription start site region 25793			523 bp downstream