rs31489643 SNP Detail

Summary

• ID
  rs31489643
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:35981080 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA ATACAGGAAC TTACGGCATC
  W
  ATTTAGGACT CTGCTGGTAA ATGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss45540518	mCV24764858	ABI	CRAMUS_MOUSE	f	SNP		T	A					A		A
ss51453726	NES14434622	PERLEGEN	MM_PANEL2	f	SNP	T		A	T	A	T	A		T	A	A	T	A	A	T
ss134776066	ENSMUSSNP6160332	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31489643					SNP	T	T	A	T	A	T	A	A	T	A	A	T	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51453726	NES14434622	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:35981080 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dcun1d1	defective in cullin neddylation 1 domain containing 1			Intron
				Noncoding-Transcript-Variant
Rr575279	regulatory region 575279			742 bp distal
Rr575280	regulatory region 575280			144 bp proximal
Tssr33003	transcription start site region 33003			1314 bp upstream