rs31488386 SNP Detail

Summary

• ID
  rs31488386
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79051970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAA ATCACAGAAA ATCGGAAGAA
  Y
  GAGTGAGCTG TAGCTCACCC TCCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45538384	mCV25348392	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss135368226	ENSMUSSNP979950	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320810212	CHEV_3_78948585	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31488386					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79051970 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr578466	regulatory region 578466			157 bp distal
Rr578467	regulatory region 578467			304 bp proximal
Rr578468	regulatory region 578468			1202 bp proximal
Tssr33630	transcription start site region 33630			1697 bp upstream
Tssr33631	transcription start site region 33631			253 bp upstream
Tssr33632	transcription start site region 33632			1249 bp downstream