rs31482964 SNP Detail

Summary

• ID
  rs31482964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120681128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCACTTTGT CAGTGTGGAG
  AGATATTTAC TCCTTTCAGT TCTACTTGGC TGGCTGTCTC ACTCTAAAGT CACACAAGCC
  AGTTTGTCAT CAGCGCGGCC ATGACTAACC AGGCAGCACA CGGCTCTGTG GACTTCTCAC
  AGAACCATCC CCACGGCCCA GGAGTCCACT AAAAACAAGG AGCAACACCC CTGAAGAAGG
  Y
  CCCAGAGCAG AAGGCTTCCA GGGCTGGGAG AGTACCTGGG TAGGAGAGGA AGTGAAGCCA
  AGAGGGACAG AGTGACAGTG TGTAGGGAAA ACTCACACAC TAAGCTCTAA GAACACATTT
  TCCTGCACAA CTTGGACCCT GAAGAAAAGT CCCAGGGAAG TCAGTCTCAC TCTGTACACC
  TCTGTGCACT AGGATTTAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
ss45538524	mCV24002648	ABI	CRAMUS_MOUSE	f	SNP		C	T			T
ss51608867	NES14656100	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T		T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	KK/HlJ	NZW/LacJ	WSB/EiJ
rs31482964					SNP	C	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608867	NES14656100	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120681128 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	395 bp upstream
Rr583992	regulatory region 583992	918 bp distal
Rr583993	regulatory region 583993	491 bp distal
Tssr35394	transcription start site region 35394	733 bp upstream