rs31474332 SNP Detail

Summary

• ID
  rs31474332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138450164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA TGGGGCTGCA GGGGTGGTTC
  R
  CCCGGGCCTC TTCTTTCTGC TCCAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45537308	mCV23172536	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A	G
ss135956727	ENSMUSSNP5127175	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320981116	CHEV_3_138407367	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31474332					SNP	G	G	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138450164 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13879	CpG island 13879			812 bp distal
Rr367566	regulatory region 367566			1133 bp downstream
Rr586189	regulatory region 586189			168 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32005	transcription start site region 32005			132 bp downstream
Tssr32006	transcription start site region 32006			1474 bp upstream