rs31471232 SNP Detail

Summary

• ID
  rs31471232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138450733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTGAAGGA GCTGCCCTGG
  GCAGCATTGT TAAGTAGGTG TCTACTTCAG AGAGTCATTT GCTCTCCCTG TCCTTCCAGT
  GCAGAGGGCC ACCTCTAGTT CGTTTTCTAT ACTGCTCCTG TCTCCAAATG ACCTCATATT
  TAAATGTCCT ATTTTATCAG GGCCAGTGGG CTCTAGCAGA AATTAGCAGG AAAACATCCA
  Y
  GTTATCATTA AAAGGAATAC ACACCAAAAT ATTAGTGACC GGAGATCTGG CAGCAGCTGC
  CAAAAACATG CACACTTCTG TCTTCGGCCA CCAACCTGCC CGTGACTGTC CAAGATAGCA
  GAGTCAACAC TTCAGTTCAG TTGTACGGTT CTGACGGAGG AATTGGTAAC AGAGACCATG
  GGCTCCCGGT CTTTCATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45536708	mCV23172548	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	C
ss135956733	ENSMUSSNP3230095	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
ss320981118	CHEV_3_138407936	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31471232					SNP	C	C	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138450733 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13879	CpG island 13879			1381 bp distal
Rr367566	regulatory region 367566			1702 bp downstream
Rr586189	regulatory region 586189			737 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr32005	transcription start site region 32005			701 bp downstream
Tssr32006	transcription start site region 32006			905 bp upstream