rs3144604 SNP Detail

Summary

• ID
  rs3144604
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  105
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118527615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTG GCACTGCCTC GCCCTAGAAA
  R
  CCTCTACGGA ACTGTGAATA GCCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37652319	NES09028448	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A		A	G	A		G
ss320471353	CHEV_2_118522870	CHEVERUD	SCREENING_POP	f	SNP							A				G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs3144604					SNP	G	G	G	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37652319	NES09028448	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118527615 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd63	ankyrin repeat domain 63			1969 bp downstream
Cpgi12087	CpG island 12087			426 bp distal
Pak6	p21 (RAC1) activated kinase 6			mRNA-UTR
				Noncoding-Transcript-Variant
Rr563299	regulatory region 563299			946 bp distal
Rr563300	regulatory region 563300			1251 bp distal
Rr563301	regulatory region 563301			321 bp distal
Rr563302	regulatory region 563302			560 bp proximal