rs31442182 SNP Detail

Summary

• ID
  rs31442182
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:80021303 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGGA GTGGCGGAAC CCCAGCAAGG
  Y
  CGCGCCACTG TTTCTTGTTG TGTTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss46033314	mCV25426645	ABI	CRAMUS_MOUSE	f	SNP	C	T
ss322281243	CHEV_7_87516441	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs31442182					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80021303 () rs orientation: forward

Symbol	Name	Function Class
Gm71928	predicted gene, 71928	within coordinates
Man2a2	mannosidase 2, alpha 2	180 bp upstream
Rr649878	regulatory region 649878	81 bp distal
Rr649879	regulatory region 649879	158 bp distal
Rr649880	regulatory region 649880	105 bp distal
Rr649881	regulatory region 649881	within coordinates
Rr649882	regulatory region 649882	1984 bp proximal
Tssr67437	transcription start site region 67437	1196 bp downstream
Tssr67438	transcription start site region 67438	896 bp upstream
Tssr73222	transcription start site region 73222	765 bp upstream
Tssr73223	transcription start site region 73223	727 bp upstream
Tssr73224	transcription start site region 73224	686 bp upstream
Tssr73225	transcription start site region 73225	187 bp upstream
Tssr73226	transcription start site region 73226	139 bp upstream
Tssr73227	transcription start site region 73227	61 bp upstream