rs31425911 SNP Detail

Summary

• ID
  rs31425911
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87417330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG CCAAAGTGAA TCCAGGACAG
  R
  CACCTGGACC TTGGGTCATA AGTCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss45532032	mCV22945992	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss320833959	CHEV_3_87313945	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs31425911					SNP	G	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87417330 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	within coordinates
Rr397760	regulatory region 397760	1486 bp downstream
Rr579501	regulatory region 579501	1508 bp distal
Rr579502	regulatory region 579502	1665 bp distal
Rr579503	regulatory region 579503	1599 bp distal
Rr579504	regulatory region 579504	585 bp distal
Rr579505	regulatory region 579505	869 bp distal
Rr579506	regulatory region 579506	839 bp distal
Rr579507	regulatory region 579507	278 bp distal
Rr579508	regulatory region 579508	1985 bp proximal