rs31369595 SNP Detail

Summary

• ID
  rs31369595
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90519153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTTCCAGCA GAGAAATAAA GCCTTATCCA TTACACGCAC
  TGGTTTTAAG GTGGTTTGTG TCTTGGCTGA GGCAGGGGAG AACAGACATT TTGGACCACT
  M
  AGCCTTGGGC CACACACAGG TGGTCTGTGG ATAGCAGGAG CTGGGCTCTC ATCCCTCTTC
  ACTGGCAGTC CTTCATCATG GACATTGTTG GAGGTGTCC                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45526344	mCV24985126	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		C
ss60424282	NES15923535	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		C	C	A	C		C	A	A	C		C
ss135477178	ENSMUSSNP446204	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								C
ss320838145	CHEV_3_90415768	CHEVERUD	SCREENING_POP	f	SNP													A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31369595					SNP	A	A	A	A	A	A	A	A	C	C	A	C	A	C	A	A	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424282	NES15923535	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90519153 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1140 bp proximal
Gm57853	predicted gene, 57853	1338 bp upstream
Rr580416	regulatory region 580416	274 bp proximal
Rr580417	regulatory region 580417	831 bp proximal
Rr580418	regulatory region 580418	942 bp proximal
S100a5	S100 calcium binding protein A5	66 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)	1036 bp upstream
Tssr30242	transcription start site region 30242	426 bp upstream
Tssr30243	transcription start site region 30243	986 bp upstream
Tssr30244	transcription start site region 30244	1023 bp upstream
Tssr30245	transcription start site region 30245	1054 bp upstream
Tssr30246	transcription start site region 30246	1300 bp upstream
Tssr30247	transcription start site region 30247	1330 bp upstream
Tssr30248	transcription start site region 30248	1436 bp upstream
Tssr30249	transcription start site region 30249	1673 bp upstream
Tssr30250	transcription start site region 30250	1882 bp upstream
Tssr30251	transcription start site region 30251	1929 bp upstream