rs31362967 SNP Detail

Summary

• ID
  rs31362967
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90520507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGGGGTCGG GGCGTGCCAG CACTCCCTGG GCGGACCTCA
  CGGATGCTGG CCACTATAAG GCCGGCCAGA CTGCGACACA TTCCATCCCC TCGACCACTC
  Y
  TTTGGCGCTT CGCTGTCGAC CGTGCGGTGA GCTCTCGCTG GGGGGTCCCT CTAGGGTCTT
  TCTGCTCCTG GGCAAGGGGT TAAGCCACTT CCTTCCCCC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45526050	mCV24985114	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss60424274	NES15923472	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	T		C	C	C	C		T
ss320838149	CHEV_3_90417122	CHEVERUD	SCREENING_POP	f	SNP													C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31362967					SNP	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60424274	NES15923472	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90520507 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13468	CpG island 13468			within coordinates
Gm57853	predicted gene, 57853			mRNA-UTR
				Noncoding-Transcript-Variant
Rr580416	regulatory region 580416			817 bp distal
Rr580417	regulatory region 580417			within coordinates
Rr580418	regulatory region 580418			391 bp distal
S100a5	S100 calcium binding protein A5			1420 bp downstream
S100a6	S100 calcium binding protein A6 (calcyclin)			mRNA-UTR
				Noncoding-Transcript-Variant
Tssr30242	transcription start site region 30242			904 bp downstream
Tssr30243	transcription start site region 30243			335 bp downstream
Tssr30244	transcription start site region 30244			319 bp downstream
Tssr30245	transcription start site region 30245			221 bp downstream
Tssr30246	transcription start site region 30246			43 bp downstream
Tssr30247	transcription start site region 30247			8 bp downstream
Tssr30248	transcription start site region 30248			82 bp upstream
Tssr30249	transcription start site region 30249			319 bp upstream
Tssr30250	transcription start site region 30250			528 bp upstream
Tssr30251	transcription start site region 30251			575 bp upstream
Tssr30252	transcription start site region 30252			1146 bp upstream
Tssr30253	transcription start site region 30253			1170 bp upstream
Tssr34246	transcription start site region 34246			1211 bp downstream