rs31335929 SNP Detail

Summary

• ID
  rs31335929
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138566645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCAC CCAGAAGTCG ATTCTGTCTG
  Y
  AGAGCAGTAG GTTTTATTTC CCCTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45522582	mCV23602034	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss135957741	ENSMUSSNP2682371	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
ss320981680	CHEV_3_138523848	CHEVERUD	SCREENING_POP	f	SNP					T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31335929					SNP	T	C	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138566645 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65713	predicted gene, 65713			398 bp upstream
Rr586217	regulatory region 586217			666 bp distal
Rr586218	regulatory region 586218			381 bp distal
Rr586219	regulatory region 586219			218 bp distal
Rr586220	regulatory region 586220			86 bp proximal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant
Tssr1062	transcription start site region 1062			357 bp downstream
Tssr32014	transcription start site region 32014			378 bp downstream