rs31329628 SNP Detail

Summary

• ID
  rs31329628
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156268206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAGA GGGAAAAGCG CTTTCCAAGC
  W
  GCCCGGGCTT AGGAAGTGTG GGGCT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45521771	mCV22727621	ABI	CRAMUS_MOUSE	f	SNP	A	A	T
ss136128453	ENSMUSSNP5299569	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		T
ss321033460	CHEV_3_156225533	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31329628					SNP	A	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156268206 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	823 bp upstream
Cpgi13974	CpG island 13974	within coordinates
Negr1	neuronal growth regulator 1	Intron
Rr587959	regulatory region 587959	927 bp distal
Rr587960	regulatory region 587960	590 bp distal
Rr587961	regulatory region 587961	within coordinates
Rr587962	regulatory region 587962	443 bp distal
Tssr32476	transcription start site region 32476	700 bp downstream
Tssr32477	transcription start site region 32477	576 bp downstream
Tssr32478	transcription start site region 32478	436 bp downstream
Tssr32479	transcription start site region 32479	373 bp downstream
Tssr32480	transcription start site region 32480	102 bp upstream
Tssr32481	transcription start site region 32481	216 bp upstream
Tssr36286	transcription start site region 36286	794 bp upstream