rs31299130 SNP Detail

Summary

• ID
  rs31299130
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:161615909 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTACCCAGAA GATCTGGGGA CATGGGTAAT TCATGGGCTG
  CTGCATGGCA CCCAGCCCCA GGAAAGGGTT TCCTTCTCAC AGCCTTGTGG AGGAGACTCA
  R
  GTGTCAAGGA CAGAACTCTG ACGCTGACTG CTCCAGAGAA GCTAAGTTTT CTTTATAAAG
  TTTCCGCAGT CAAGGGAAAC ACCTTTCTCC TGTTCTCTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45017697	mCV24537057	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss145922214	ENSMUSSNP1768057	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31299130					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161615909 () rs orientation: forward

Symbol	Name	Function Class
Fasl	Fas ligand	mRNA-UTR
Rr421846	regulatory region 421846	8 bp proximal
Tssr14586	transcription start site region 14586	19 bp downstream
Tssr14587	transcription start site region 14587	109 bp downstream
Tssr14588	transcription start site region 14588	124 bp downstream
Tssr14589	transcription start site region 14589	132 bp downstream
Tssr14590	transcription start site region 14590	149 bp downstream
Tssr14591	transcription start site region 14591	160 bp downstream