rs31296685 SNP Detail

Summary

• ID
  rs31296685
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162693559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACCCATGT TTTCTATGCT TACATAAAAT ATATGGAATT
  AAACTGTAGA AGTGACTCTC AAAGCCTTCA TCTGGATACT TGTGGATTGA AGATTAGCAG
  R
  TAAGATTTAT AAATAGTACA AAAATCGAGA AATTTGATTC CCAAGTACAG AATAGAGCAG
  GAAACACAGA AACAGAAAAT TGGTGAAGTG CAAACCTAA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45017791	mCV23041820	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss145945123	ENSMUSSNP3180763	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31296685					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162693559 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	1435 bp distal
Rr422027	regulatory region 422027	611 bp distal
Rr422028	regulatory region 422028	466 bp proximal
Rr422029	regulatory region 422029	610 bp proximal
Tssr14673	transcription start site region 14673	369 bp downstream
Tssr14674	transcription start site region 14674	435 bp downstream
Tssr14675	transcription start site region 14675	450 bp downstream
Tssr14676	transcription start site region 14676	473 bp downstream
Tssr14677	transcription start site region 14677	493 bp downstream
Tssr14678	transcription start site region 14678	512 bp downstream