rs31291462 SNP Detail

Summary

• ID
  rs31291462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79127367 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGA ATAAACCCTT TCCTCCCCAA
  Y
  TTGCTTCTTG GTCATGATGT TTGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45518939	mCV23538051	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss135368973	ENSMUSSNP1795625	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		T
ss320810469	CHEV_3_79023982	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31291462					SNP	C	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79127367 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	501 bp downstream
Rr578485	regulatory region 578485	601 bp distal
Rr578486	regulatory region 578486	1331 bp proximal
Rr578487	regulatory region 578487	1768 bp proximal