rs31284175 SNP Detail

Summary

• ID
  rs31284175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122037760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGGGTCTAC AAATGTACAT CTCAGAAACA ACGTGAAGTC
  CTCCGTGCAC TCCTGAGTGT GCCAGCCTGT GATAGTCAGG TTATAACAGG AGAGAGTAGA
  R
  TACAACAACA ATTTTGAGGG CTAGGGATGC CCACTGTCAG AACGCATGTG TAAGCCTTCG
  ACCCCAGCAC CATAAATAGT AGTTCTCACT TACTGAACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45517231	mCV23980394	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
ss320909879	CHEV_3_121947029	CHEVERUD	SCREENING_POP	f	SNP					A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31284175					SNP	A	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122037760 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	1106 bp proximal
Gclm	glutamate-cysteine ligase, modifier subunit	1446 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	301 bp downstream
Rr375675	regulatory region 375675	within coordinates
Rr397979	regulatory region 397979	1088 bp upstream
Rr584261	regulatory region 584261	997 bp distal
Rr584262	regulatory region 584262	259 bp distal
Rr584263	regulatory region 584263	892 bp distal
Rr584264	regulatory region 584264	within coordinates
Rr584265	regulatory region 584265	631 bp proximal
Rr584266	regulatory region 584266	1229 bp proximal
Rr584267	regulatory region 584267	1362 bp proximal
Tssr1039	transcription start site region 1039	1632 bp upstream
Tssr31477	transcription start site region 31477	982 bp downstream
Tssr31478	transcription start site region 31478	1365 bp upstream
Tssr31479	transcription start site region 31479	1452 bp upstream
Tssr31480	transcription start site region 31480	1470 bp upstream
Tssr31481	transcription start site region 31481	1499 bp upstream
Tssr31482	transcription start site region 31482	1514 bp upstream
Tssr31483	transcription start site region 31483	1665 bp upstream
Tssr31484	transcription start site region 31484	1799 bp upstream
Tssr35443	transcription start site region 35443	1108 bp downstream
Tssr35444	transcription start site region 35444	1191 bp downstream