rs31268564 SNP Detail

Summary

• ID
  rs31268564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:76752717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAATA CCAGAGCATA CCAGAAAACT
  R
  GACGTGTGTT GGGACCAATG CCCGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ
ss39271419	mCV23494499	ABI	CRAMUS_MOUSE	f	SNP		G	A			G		G
ss49233178	NES12519979	PERLEGEN	MM_PANEL2	f	SNP	G		A	G	A		G		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	MOLF/EiJ	NZW/LacJ
rs31268564					SNP	G	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49233178	NES12519979	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:76752717 () rs orientation: forward

Symbol	Name	Function Class
4930444M15Rik	RIKEN cDNA 4930444M15 gene	within coordinates
E130202H07Rik	RIKEN cDNA E130202H07 gene	481 bp upstream
Gm63554	predicted gene, 63554	120 bp downstream
Rr389872	regulatory region 389872	within coordinates
Rr495676	regulatory region 495676	1617 bp distal
Rr495677	regulatory region 495677	1009 bp distal
Tssr126731	transcription start site region 126731	665 bp upstream
Tssr126732	transcription start site region 126732	699 bp upstream
Tssr129811	transcription start site region 129811	208 bp downstream
Tssr129812	transcription start site region 129812	243 bp downstream