rs31263107 SNP Detail

Summary

• ID
  rs31263107
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79749644 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAATAC GGCATGCTCG
  GCAAACGCTC TGCTCAGCTA TACCCGAACC CCGTTTTTAC TTTGTTTGAT TTGAGACAGT
  CTCGCCAAGC TTTTCTAGGC AGACTTTAAA CTCGCTTCAG AGCTCAGTCA AGCTTTAAAC
  TTGTGCTAGA TCCCTCCCAT TCATTTAAAA TTTTTTCAAG TTTTAGTTAG ACAATAGGAC
  M
  ATAAATATCA CGTGGGTCAG GTAGCACGTG ACCTGCCCAC ACGCGTTTAC CTTAGACAGA
  TTACCAACCA GGCAGCAGCT ATCGAAATAG TTCGTATTTC TCCAAGGTAA AAGCTTTCAA
  CATTCCGTGG AAAAGTCTCA AGTCCAAGGA TTCTAAGGTT TACGTGTTAA GTATCCACTT
  AATATTTTAT TAAGCTACAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47034628	NES10770955	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31263107					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47034628	NES10770955	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79749644 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13278	CpG island 13278			288 bp proximal
Gm64378	predicted gene, 64378			428 bp upstream
Rr397727	regulatory region 397727			within coordinates
Rr578586	regulatory region 578586			619 bp distal
Rr578587	regulatory region 578587			118 bp distal
Rr578588	regulatory region 578588			332 bp proximal
Rr578589	regulatory region 578589			439 bp proximal
Rr578590	regulatory region 578590			1730 bp proximal
Tmem144	transmembrane protein 144			Intron
				Noncoding-Transcript-Variant
Tssr29591	transcription start site region 29591			422 bp upstream
Tssr33748	transcription start site region 33748			305 bp downstream
Tssr33749	transcription start site region 33749			520 bp downstream
Tssr33750	transcription start site region 33750			1099 bp downstream