rs31241970 SNP Detail

Summary

• ID
  rs31241970
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121086731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCAGTCAGT GCTCTTAACC GCTGAGCCAT CTCACCAGCC
  CCTATATTGT ACTTTTTTAT ATTGCAGGCA GCACAGTGAA TTTGTTCATA GATTACCTTG
  R
  GCTACTGTGT TATGGTTGCT GTGTCACTAG ACAATAAGGA ATTTTCTGTT CCTTTTTAAT
  GTCATGTGAC CAATATCCTG TCATTGACTA AAACATCAT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45513817	mCV23993262	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135717690	ENSMUSSNP1794030	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31241970					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121086731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Cpgi13756	CpG island 13756			793 bp distal
Gm56787	predicted gene, 56787			1409 bp upstream
Rr367543	regulatory region 367543			1243 bp downstream
Rr584038	regulatory region 584038			1460 bp distal
Rr584039	regulatory region 584039			1245 bp distal
Rr584040	regulatory region 584040			1230 bp distal
Rr584041	regulatory region 584041			1194 bp proximal
Rr584042	regulatory region 584042			1314 bp proximal
Tssr31434	transcription start site region 31434			1265 bp downstream
Tssr31435	transcription start site region 31435			1250 bp downstream
Tssr31436	transcription start site region 31436			1220 bp downstream
Tssr35412	transcription start site region 35412			1468 bp upstream