rs31217000 SNP Detail

Summary

• ID
  rs31217000
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79132793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAACTCAG GACCTATGTG
  TGGTCCCATC CAGGCAATCC TTCTGATGCA GGGGTAGGAA AGCATCCAAA GATGCTAGGA
  ATACATCCAA AGATGCAAGA GTATTTATCT CCCACTCTCT ACATCACAGG CCTCCAGAAA
  AGCATCTAAA GTGGAATCTT CCCTCAAAAG ATCTGGTGGC TTCTTTTCCT TCTTTAACAT
  K
  GAGAAACCTT GAAACCAGTG GTAGGACTCA GAACAAAATG CAAATTTTGC AGACAATCTG
  GGATGATGTT TCAGGCAGGG TAGGTAATCA GACTGAATAA GCCCTGGCAG AGTGTGCAGT
  CGGTCCTTAA CCAGACTCTG CTCATTACTC CCTGCCCTTG AATATATCAC TCCATCCTGC
  TTGAGCCTCC ACATCCTTAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47028883	NES10757529	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31217000					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028883	NES10757529	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79132793 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Gm66403	predicted gene, 66403	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr578488	regulatory region 578488	1742 bp distal
Rr578489	regulatory region 578489	1790 bp proximal