rs31214927 SNP Detail

Summary

• ID
  rs31214927
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79142029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTTATCTA AGTCTAAATT
  ATTTTCTGCA AAACGTTTTC TAGAAAATTA AAAATTAAAT TTCTAACACT CTCCTGCACC
  TCACTGGAGT TTACATTGTT TCTTATTTGC TTTAGGCAAT CAGCTCACCC CTCCCTCTAC
  TGTAGTCGAA AGCAATTTGA TACTTCATCA AGACAGTTAC TCAACACAAT TACCACAACT
  M
  ACATACTTCT CTGACAATAC AAGAATGTCA CCAGGATCGT CTATCATCAT ATAAAGACTA
  ACACATAATT GTATTGGAAC CTGGCCCCCA AAACTGCAAT TTGATATCTG TCATAATTTT
  AGAGAGCTGA GAAATAAATA AAATATAACA AAATATTAGA ATAATTTTCA TTTAACTCCA
  TAAATAAAAT AAGTGAACCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47028957	NES10757250	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31214927					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028957	NES10757250	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79142029 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
B930012P20Rik	RIKEN cDNA B930012P20 gene	597 bp upstream
Gm66403	predicted gene, 66403	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr578490	regulatory region 578490	335 bp distal