rs31213211 SNP Detail

Summary

• ID
  rs31213211
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79141076 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACAACTCT CTATGTATAT
  AATAATCACT AAAGAGAAAT ATGTCAAAGT CAGTTATCTC AATCTTGTGG GCTGGCCTGC
  TCAGGCTCGC TCTCTCTCCC TCGCTCTCTC TCTCTCCCTC CCCCCCCCCC CCCCCCCGTA
  ATATGCAAGA CTGTTACTTT ATATCTGCTA CAGAAAATTT CTCAACATGA AACATTCTCA
  Y
  AGTCACTTCA CCCAGTCACA TTCTTTCATA CTCTTGCATT GGTCATGTTC ACCCCCTGTG
  GTCACGTACA CCCTCTGCCC CCTTAGCCAA GAAAAAGAAG AAAGTTGTGA TACATGTTGT
  AATTTTGTAT CCAGCAAACT TGAAACTGAA GTTAGGGTAT GAGGCCTCAC ATGTACTCCT
  GATGCTGTTC CAACTATGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47028941	NES10757241	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31213211					SNP	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028941	NES10757241	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79141076 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
B930012P20Rik	RIKEN cDNA B930012P20 gene	within coordinates
Gm66403	predicted gene, 66403	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr578490	regulatory region 578490	within coordinates