rs31211992 SNP Detail

Summary

• ID
  rs31211992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79125039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGATTAAAG GTGTGCACCA CCACTACCCG GCTCTTCTAT
  TACTCTTAGT AAGCTGTCTC CAAAGAAATG TGTTTAAATG GTCTATGCAC AAGGAGCTTA
  K
  AGTAAGATGA CAGAGCTAGT CTACATTGTT CTCCTACCTG AAAACTGATG TTGTCCAGCT
  TGAACTAGGT ACCTTAGTAA GTAGTTTCTA TATGAACATT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47028791	NES10757728	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31211992					SNP	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028791	NES10757728	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79125039 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	139 bp upstream
Rr578485	regulatory region 578485	681 bp proximal