rs31211990 SNP Detail

Summary

• ID
  rs31211990
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79124373 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATAGAGC ATATGTAACC
  TATGAATGAT TACCACCAGT GTTTATTTAC CTCAAGACCA TAATCTGTAA ATAGAGAGCA
  ATGGAATACA GTCGCTCACA TAAGAGAATG TGTTGGCAGT TGTTACTGAG CCTGCAGCTC
  ACAACACACA GACTCCAGGA AGGGAGTTAC ACACTGACTG TTTTCACACT ACTAATGCCT
  R
  GCAGGACTTT TTACAGCAGA AATTCCTTCT AAACCTACAG AACTGCATAA ATTAAACACC
  ACTCAAGCAA TTCATGACCA TAAAATCCTG TTCCATGGAC ATATGGATGG GGTAGGGGTT
  GTTTGTTTGT TTGTTTGTTT CTGGTATTTT TCATTTTGGT TTTGTTTTGT TTCAGGTGTG
  ACTGCTGTAT TTTATGTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47028789	NES10757776	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31211990					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028789	NES10757776	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79124373 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	805 bp upstream
Rr578485	regulatory region 578485	1347 bp proximal