rs31211988 SNP Detail

Summary

• ID
  rs31211988
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79124269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCACAGTTGT TTCACGCTCA
  TATTTCTGTG TAAGTGTGTC ATATGTACCA TGTATGTTGT ATGATGTATG TGGACTTAAA
  AGGTTAATCA GTGCATAACA CATAAGTATA GAGCATATGT AACCTATGAA TGATTACCAC
  CAGTGTTTAT TTACCTCAAG ACCATAATCT GTAAATAGAG AGCAATGGAA TACAGTCGCT
  S
  ACATAAGAGA ATGTGTTGGC AGTTGTTACT GAGCCTGCAG CTCACAACAC ACAGACTCCA
  GGAAGGGAGT TACACACTGA CTGTTTTCAC ACTACTAATG CCTGGCAGGA CTTTTTACAG
  CAGAAATTCC TTCTAAACCT ACAGAACTGC ATAAATTAAA CACCACTCAA GCAATTCATG
  ACCATAAAAT CCTGTTCCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47028787	NES10757774	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31211988					SNP	C	C	C	C	C	C	C	C	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47028787	NES10757774	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79124269 () rs orientation: forward

Symbol	Name	Function Class
4921511C10Rik	RIKEN cDNA 4921511C10 gene	within coordinates
Rapgef2	Rap guanine nucleotide exchange factor (GEF) 2	Intron
Rr375215	regulatory region 375215	909 bp upstream
Rr578485	regulatory region 578485	1451 bp proximal