rs31208094 SNP Detail

Summary

• ID
  rs31208094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146192140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACCATGTC TTTATTTGGG
  AGCTATAGGA GGCATAGAAA AGTCAAAAAC AATAAGTTTG AAATATCATC TGGTGTAGAA
  TAAATTGAGA TGATAAGAAA TATAATTACA AAGCAATACC CTGCAGCTGT AATGGATACT
  GTCATTAGTT TTGGGGAGAT ATATTTCACT TACATATACT ATACCAATTT TGCCCTTGCA
  Y
  ACCTTATTTG CCTATGAAAT ATGATGAAAA TGTTCAACTG ACATTTTTCT ATATAGTTCT
  GTTTCTGTAA ACTTACTTTA ATGAAAATAT TTTGGTTATT TGCCACTTTG TGTACATGTG
  TATATGTAGG TGCACCCGTG TGTATGGGTG TGTGTACACA TGTGCATGTG GAGACCAGAA
  GTCAATCTTA AGTGTCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47027702	NES10838917	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31208094					SNP	T	T	T	T	T	T	C	T	T	T	C	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027702	NES10838917	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146192140 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			194 bp proximal
Rr587034	regulatory region 587034			203 bp proximal
Rr587035	regulatory region 587035			264 bp proximal
Spata1	spermatogenesis associated 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant