rs31207206 SNP Detail

Summary

• ID
  rs31207206
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146191770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCATTAC CTCTGATTGG
  TTAATAAAGG GCTGGCCAGC CAATTTGGAA CTTCAAATCC CAGAGAGGGT CTCAAGTAGG
  CACCACAAAG GCAGGGGGAT GGAGGAGAGG GAGAATGAGA AAAGGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAGAGAGA GAGAAGCTTC AACATGATCA
  Y
  TGGTCATAAG CAGGTCACCA AGGGAAGTGG TCATAAGGAT ACTGATGGAG CAGAAGCAAC
  CAAGACAGGA CTAAGATGGC AAGTAATGGG GCACGTGGCT GGGTAGATTA GACAGAATAG
  CTCAGTATCT GGCCAGCAAT AGTATAAGGA TCTTGTAATA AATATAGGGT CACCATGTCT
  TTATTTGGGA GCTATAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47027694	NES10838913	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31207206					SNP	C	C	C	C	C	C	T	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027694	NES10838913	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146191770 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			564 bp proximal
Rr587034	regulatory region 587034			573 bp proximal
Rr587035	regulatory region 587035			634 bp proximal
Spata1	spermatogenesis associated 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant