rs31206863 SNP Detail

Summary

• ID
  rs31206863
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152336650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATCATAGTT TTTCAGTGTT AGCTCAGAAA
  GGTCTGAGCT CCCCTTTCAC CCGAGTGTAA TTCAGAGAGA CCGTGGGACA GAGATAAATG
  ATCAAGAACC CGCTTTTCCA GCAAGCACAT GGATCTTAat tggagctact gtaccaatgt
  R
  tcttagatta catcatctgt aagcgaagga cttggctttg gagcctggga agtacaagat
  caagttgctg gtagagctgg tgtcagataa gggctccacc tctgcctcac agttggtagc
  ttgttgctgc tccctcaaat agcaggaGGA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	MSM/Ms	PWD/PhJ	SM/J
ss49713793	NES13063052	PERLEGEN	MM_PANEL2	f	SNP	A	A	A				G
ss145731310	ENSMUSSNP4938319	ENSEMBL	ENSEMBL_Sanger	f	SNP	A			A		G
ss320065956	CHEV_1_154308029	CHEVERUD	SCREENING_POP	f	SNP					A			G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	LG/J	MSM/Ms	PWD/PhJ	SM/J
rs31206863					SNP	A	A	A	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713793	NES13063052	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152336650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420464	regulatory region 420464			1571 bp distal
Rr420465	regulatory region 420465			880 bp proximal
Rr420466	regulatory region 420466			1528 bp proximal