rs31206859 SNP Detail

Summary

• ID
  rs31206859
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152337158 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTGTGCCAT GATGGGTTTG TGGTGTCATT
  TGCTTGGCAC ACATTTAttt tcttgatgct ggggattcaa tccagagctg tgtatatgct
  atggaagtat tctaccattg agccacatcc caacccACAT CACCGGTTTT CTTCAGTGTC
  Y
  GAGGGATGCC CCATTACTCC TCTGGGTACC TTTCCTGGTC TGTCTGACAA AGGATAAGGA
  CTCTGAGGAA TTCTCACTTT CCATTTGGAT CTGATGGAGC TCGCAAGTTT ACGCGAAGAG
  CCAGAGAGCC TCAGCTTGTC CTGAAGGGAT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49713789	NES13062980	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	T	T	C		C		T	C	C		T
ss145731328	ENSMUSSNP4784303	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					T					C
ss320065960	CHEV_1_154308537	CHEVERUD	SCREENING_POP	f	SNP										T						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31206859					SNP	T	T	C	T	C	T	T	T	C	T	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713789	NES13062980	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152337158 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420465	regulatory region 420465			372 bp proximal
Rr420466	regulatory region 420466			1020 bp proximal