rs31206112 SNP Detail

Summary

• ID
  rs31206112
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146190535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAACACCTC ATTTGAATTA
  CAGGAATTTT TTATTTGTTT TTAGAAAAGC ACCAAAAATT AACCTGAAGA GCTCAGAGTA
  CTTCTAGGCA TTGGTCTGCT GTCCATCTTA CTGCATGCCC TCAAGCCCTA CATTCTTTTC
  AGTGGCCTGT GTGAGCCCCA TAAATAAAGG CTGAGATAAG ACCCCTACCT TTAGAATAGC
  Y
  TTGAGCCTAT AGCAACATCC TGCTATTTGC CACATCCTGG GCTCAAGAAC TAACTCTTAG
  TTTTTCAATT CCTTCTTTAC TGTGCCCTGA ACATCTGCTT GTGGGCTTCT GCTTCAGGAG
  ACTGCTCCTG CCCTCTCAAG GTCCTGTTGT CAGCACCCCC GGGCCTGACA GGGACCCTAG
  CTGGTTAGAA GCATTTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss47027690	NES10839021	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs31206112					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47027690	NES10839021	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146190535 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			1799 bp proximal
Rr587034	regulatory region 587034			1808 bp proximal
Rr587035	regulatory region 587035			1869 bp proximal
Spata1	spermatogenesis associated 1			Intron
				Noncoding-Transcript-Variant