rs31205888 SNP Detail

Summary

• ID
  rs31205888
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152338030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGTCCAT GAAACCACCT TCTCAGTACA
  GCAGAGGATA TTTAGGCAGA TTTGGGGATT GTTTCATCTG CAGGCCAGAA ACCTTTATTT
  CCTCTAATAA CAATATTTTT AAAAGGGACT GGGAAATGCT TCCATATGCA AAGAGGACAA
  M
  GAGAACATAG TCCTGTGTGA CAAAGAAACA ACCGCGAAGA AAAATGAGTA AATTATTTCA
  CATTACTTAA AAAACAATGA AAAATATCGG AATTCTATGA AGAATGTTAT GCTGTAAATC
  TAATTCTGGT CCAGGAGTGA CTCTACTCGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49713777	NES13062992	PERLEGEN	MM_PANEL2	f	SNP	A	C	A	C	A	C	C	C	A		A	C	A	A		C
ss320065975	CHEV_1_154309409	CHEVERUD	SCREENING_POP	f	SNP										C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31205888					SNP	A	C	A	C	A	C	C	C	A	C	A	C	A	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49713777	NES13062992	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152338030 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Colgalt2	collagen beta(1-O)galactosyltransferase 2			Intron
				Noncoding-Transcript-Variant
Rr420465	regulatory region 420465			81 bp distal
Rr420466	regulatory region 420466			148 bp proximal