rs31195853 SNP Detail

Summary

• ID
  rs31195853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83900032 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGGT TACAGGAAAT AGAGACTGCA
  Y
  GCTGCAAGGA GCCCGGCGCT AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45508082	mCV23526120	ABI	CRAMUS_MOUSE	f	SNP		C					C		T
ss51569594	NES14675070	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C		C	T	C	T		C	C	C	C		C
ss135419360	ENSMUSSNP4180102	ENSEMBL	ENSEMBL_Sanger	f	SNP		C							T
ss320821991	CHEV_3_83796647	CHEVERUD	SCREENING_POP	f	SNP												T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31195853					SNP	C	C	T	T	T	C	C	C	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569594	NES14675070	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83900032 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	321 bp distal
Rr578945	regulatory region 578945	44 bp proximal
Rr578946	regulatory region 578946	736 bp proximal
Rr578947	regulatory region 578947	1315 bp proximal
Tmem131l	transmembrane 131 like	Intron