rs31189639 SNP Detail

Summary

• ID
  rs31189639
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:7708996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GCAGGTATCC GCTGACCCTG CTCCCAAGGT AGCCCGGTGC TGGCGCCTAC CAGAAGGGAC
  TTGTGTCCCT GGTCAGGCAG GGTTTTCTGC TTCCCTAATA AATGCTGTCT CAGGTCCCAC
  ACGATTGGAT TGGAACAGAA GTTGTGTGCC ACTCACCAGA GGTCCTAAGA CCCCGTGGAG
  AGTACTCTGG GGACCTTGGG GGTGTCTGCT GACTCAGTGC CCAAGGTGAT CTGGTGCTGG
  CGCTGACCGG AAGCCAAAGC CATACTTTTA TGAGAATGAG TTTTTGTTAA TTTAAAAAAA
  W
  AAATATATAT ATATATATAT ATATATATAT ATATATATAT ATATCCCCAA TTAAAGAAAC
  CCTCATGGGA TTCTTTCTCT TTAAATAAAG TCTATCATTG CTACTCAGTA ACAGAAGAAA
  TGATATAAAT AACATACACA CTGTACAACA TATTGGTTAC AGTCATGTAA AATGTCAGTC
  TCTTCATTGT TCTTGAGGCC ACAGGTTTTG TCTTGTTTGT GAGCCTCAGA ATAGTTTTCT
  CAATTTTTTT TTCTAGAATT TTGTCCATTT TAAAAGTGTT TTTCTTTAAC TAATTTATCT
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45507535	mCV25453662	ABI	CRAMUS_MOUSE	f	SNP	A	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs31189639					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:7708996 () rs orientation: forward

Symbol	Name	Function Class
Gm16685	predicted gene, 16685	within coordinates
Rr573264	regulatory region 573264	529 bp proximal
Rr573265	regulatory region 573265	1510 bp proximal
Tssr28315	transcription start site region 28315	632 bp upstream