rs31189205 SNP Detail

Summary

• ID
  rs31189205
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116721017 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTG ATTTTATGAA AATTACCTCG
  Y
  TTCGACCTGA AACAGGCTGC TTAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45507347	mCV22284352	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss135675718	ENSMUSSNP4834496	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss320896859	CHEV_3_116630286	CHEVERUD	SCREENING_POP	f	SNP				T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs31189205					SNP	T	C	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116721017 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583806	regulatory region 583806			1676 bp proximal
Tssr1028	transcription start site region 1028			93 bp upstream