rs31156804 SNP Detail

Summary

• ID
  rs31156804
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87823180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTGTTCC TCTCTCTGCT CCTTTCTCCC CACTGCTGAC
  CCGTTTTTTG AGGTGCGCTA GGAGGGAGGC TCGCCTCTGA CCGGGTTGGC TTTCTCTTTG
  R
  ACATGGGGCT TTGATGTTCT TCCAGAGTTG GTCTCTGGTG TTTTCTCACA TCCAGTTTGT
  AGCCCACTAA GAATACAGGG AAAAGTGTCC TCCAGCCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45505311	mCV23484516	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135468753	ENSMUSSNP1226121	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		A
ss320835497	CHEV_3_87719795	CHEVERUD	SCREENING_POP	f	SNP					A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31156804					SNP	G	G	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87823180 () rs orientation: forward

Symbol	Name	Function Class
Hdgf	heparin binding growth factor	mRNA-UTR
Rr579572	regulatory region 579572	1306 bp proximal
Tssr29850	transcription start site region 29850	928 bp downstream
Tssr29851	transcription start site region 29851	793 bp downstream
Tssr29852	transcription start site region 29852	778 bp downstream
Tssr29853	transcription start site region 29853	690 bp downstream
Tssr29854	transcription start site region 29854	546 bp downstream
Tssr29855	transcription start site region 29855	361 bp downstream
Tssr29856	transcription start site region 29856	325 bp downstream
Tssr29857	transcription start site region 29857	301 bp downstream
Tssr29858	transcription start site region 29858	270 bp downstream
Tssr29859	transcription start site region 29859	238 bp downstream
Tssr29860	transcription start site region 29860	90 bp downstream
Tssr29861	transcription start site region 29861	68 bp downstream