rs31148086 SNP Detail

Summary

• ID
  rs31148086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120678313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTTGCTCGC TTCACAGATG
  ACGAGAGACA TTGGACTAAC TGGGGTTGTC AAGACTAATA GATCTCGGGC ACTTTTCCCC
  AGTGGAGGAG TTCAGTTTCT TCTAATGACC TCTTTTGTTT CCCCCAGGAA ACTTTAGCCT
  TCCCCCTTCT TATTTGCCTT CGAGTGTCAG ACCCATGGAT GAGTAATAAT ATTTCACAAG
  Y
  GTGTGCATTC AGGAGCGTAG TCTTATGTGA CCCTATCTGC TCCCTCAATA GGTGAGGATA
  AAAGCTTGGT GTAGTGACTG AAAAATTTGT TTCATAGCAG GGAAGAAATT GTCTCTGGTC
  TTTTAACAAA ACTCCTTCCT AAAGCACAAG GCAAAAAAAA AAAAAAAAAG TCCACCCAGA
  CAGGTAGAGA AAACGCTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45503563	mCV24002994	ABI	CRAMUS_MOUSE	f	SNP		C	T					T		T
ss51608930	NES14656071	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T		C	T	T	T	C	T	T	C	C
ss135709314	ENSMUSSNP5163789	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31148086					SNP	C	C	T	T	T	T	T	T	C	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608930	NES14656071	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120678313 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583990	regulatory region 583990	626 bp distal
Rr583991	regulatory region 583991	794 bp distal
Rr583992	regulatory region 583992	1355 bp proximal
Rr583993	regulatory region 583993	1898 bp proximal