rs31142462 SNP Detail

Summary

• ID
  rs31142462
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:106946442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATTG CTGTTATCCC ATAATGACTG
  R
  ATCAAAAAGG AAATTATCAT CTTTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45501784	mCV23064080	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss135581325	ENSMUSSNP2919259	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs31142462					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:106946442 () rs orientation: forward

Symbol	Name	Function Class
AI504432	expressed sequence AI504432	378 bp upstream
Gm38712	predicted gene, 38712	1706 bp downstream
Gm56792	predicted gene, 56792	818 bp upstream
Kcna3	potassium voltage-gated channel, shaker-related subfamily, member 3	mRNA-UTR
Rr397927	regulatory region 397927	622 bp downstream
Rr397928	regulatory region 397928	within coordinates
Rr582887	regulatory region 582887	1529 bp distal
Rr582888	regulatory region 582888	160 bp distal
Rr582889	regulatory region 582889	within coordinates
Rr582890	regulatory region 582890	1353 bp proximal
Tssr31149	transcription start site region 31149	182 bp downstream
Tssr35008	transcription start site region 35008	1064 bp upstream
Tssr35009	transcription start site region 35009	791 bp upstream