rs31123649 SNP Detail

Summary

• ID
  rs31123649
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90417528 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TGGCTTCGAA CTCACAAAGA TCCACCTCCT GACCCCCCCT AACCCCGCCC CTCCCAGTAC
  TGGGATTTAA GACCCACACT GGACTCATCT ACATCCTTTT ATAGGGACTG CCTCTAGAAG
  ATGTGGCTAG TTTTAGGGTG GGTCTTTTTA CCTCAAGTAA TCCAATAAAG CAAATCTGTA
  TCCCCACTTA TGTATCCCTA GTTCTTACAT AATGTCTAGC AATGATGAGG CATCAATAAA
  CACTGAATGA AGCTTGGGAA AAAGTTCTTC TAGTAGTTTT TTGGTTTTGT TTTTTTTTTT
  K
  TTGTTGTTGT TTTTTTTTTT TTTTTTTTTT CCGAGACAGG GTTTCTCTGT GTAGCCTTGG
  ATGTCCTGGA ACTCACTCTG TTGACCAGGC TGGCCTTGAA CTCAGAAATC TGCCTGCCTC
  TGCCTCCCGA GTGCTGGGAT TAAAGGCGTG TGTCACCACT GCCTCTGGTA GTTTTTTTGA
  GACAGAGTCT CTATAATGTA GTTCTGGCTG TTCTAGAATT CTCTATACAG ACCAGGCTGG
  GCTTGGACTC ACAGAGATCC TCCTGCCTTT TACGTCCCAG GTGCTGAGCT GGTGTTAACT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45500619	mCV23476230	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs31123649					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90417528 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	723 bp upstream
Cpgi13465	CpG island 13465	452 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	1159 bp upstream
Rr397813	regulatory region 397813	544 bp downstream
Rr580381	regulatory region 580381	1115 bp distal
Rr580382	regulatory region 580382	1298 bp distal
Rr580383	regulatory region 580383	233 bp distal
S100a1	S100 calcium binding protein A1	813 bp downstream
Tssr30207	transcription start site region 30207	1116 bp downstream
Tssr30208	transcription start site region 30208	535 bp downstream
Tssr34237	transcription start site region 34237	1490 bp upstream
Tssr34238	transcription start site region 34238	715 bp upstream
Tssr34239	transcription start site region 34239	693 bp upstream
Tssr34240	transcription start site region 34240	912 bp downstream
Tssr34241	transcription start site region 34241	1799 bp downstream