rs31121054 SNP Detail

Summary

• ID
  rs31121054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83900906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TACTT ACATATAATG AAAGGTAGCT
  R
  GCTCATCAAT TTACCCCACT CACGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45500285	mCV25073412	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	G
ss135419366	ENSMUSSNP7022508	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		G
ss320821994	CHEV_3_83797521	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31121054					SNP	A	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83900906 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	1195 bp distal
Rr578945	regulatory region 578945	43 bp distal
Rr578946	regulatory region 578946	117 bp distal
Rr578947	regulatory region 578947	441 bp proximal
Rr578948	regulatory region 578948	1661 bp proximal
Tmem131l	transmembrane 131 like	Intron