rs31116419 SNP Detail

Summary

• ID
  rs31116419
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15334061 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATCTCTGA CACATGACTA
  GCTAGCTACA TTCCTGACTC CTCATTACCT GAGAAGAGAG AGGGCTGGGC AGAGTAGGCT
  GCAGCCCAGT AGGTGATGAA CAAATCCTTG GTGGAGGGAA CCCAGCTTCC GCAGCTCTCC
  TGTATGACCT GGGACGTCGA AAACACTGCA GTGAGCTCTG TGGGCCTTAA GACAGTCTCC
  S
  TCTCAGCACT GTGCGGCCTC AGCACTTAAT CCTGTAAGGT TGCATTTTTC TTCAGACACA
  TCAATTAAAA CGACATATTG CAGCAAATTG AATACAGAAG CAGATATGAG AAAGTAACTA
  CCTTTTATTA TGACAAATGT TAGAGAGGCT TAAAAAAAAC TGGAGGCCGT GTTTGCTCTC
  TCGGTAGCTA CTTTTCCTTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49205615	NES12676623	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G		C	G	G	C		C
ss325533082	CHEV_18_15359513	CHEVERUD	SCREENING_POP	f	SNP											G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs31116419					SNP	G	G	G	G	G	G	C	G	G	G	G	C	G	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49205615	NES12676623	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15334061 () rs orientation: forward

Symbol	Name	Function Class
Gm50035	predicted gene, 50035	108 bp downstream
Gm57822	predicted gene, 57822	within coordinates
Rr534370	regulatory region 534370	473 bp proximal