rs31116415 SNP Detail

Summary

• ID
  rs31116415
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15334572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCACGAA TACTTTAAAA
  TACTTTGTTT TAACCCCTAA ATATGGTCCT TGCACGGGTT GATGTAGGCA GTATAAACGT
  GGGCTCTTGA GTGTTCTTGA CAATTCATAA GAGTAGAAAA GAGTCTCTAG GCCCAGGGTT
  TGGGCATCTC TATCCTATTG TGAAATATCT CAGAAGCAGA GCTCTCTTGA AGGTTGGCCT
  K
  TTTCATGTGC AGGGTGACAC TAGAAGGAAC ATTTGCTCTG AGCCAGCAGC ACGACTCCTC
  CCTCAAGTGC CAGTGCCTCC CAGGGGAGGG GAGCCTGCAG GCCTAACAGG CAACCATCTT
  CCTCTACCTC ACAGTGCCCT TTGATGGAGT CTTCCTCTTT CTTATTGACT TGCATGCAGT
  GGTATTGGCT CCTTCATGTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49205611	NES12676582	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T		G	T	T		T
ss325533087	CHEV_18_15360024	CHEVERUD	SCREENING_POP	f	SNP											T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs31116415					SNP	T	T	T	T	T	T	G	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49205611	NES12676582	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15334572 () rs orientation: forward

Symbol	Name	Function Class
Gm50035	predicted gene, 50035	within coordinates
Gm57822	predicted gene, 57822	within coordinates
Rr534370	regulatory region 534370	within coordinates