rs31112733 SNP Detail

Summary

• ID
  rs31112733
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:95310841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAGATGAC CCTTGTAGAG
  CTGTAAATCC AACTCAGTGG GACAGAAGTA TTCAAATGCC TGCCAGAGAT AGTAGAATAG
  CTTGAAGAAA AACACAAGAG TTCCAACTAA GATACATAAG CCCCAGAGAT CATACCAGTA
  AACCAACAGG CCAGGATTCT TTCTACCTGT GTCTATCCAC CCCCAAATCC CAGCTTCTCC
  Y
  GTCTCTCCTC ACCCCACTGG TCTTCAGTCC ATTCACAGTT CCAGGCCTGA CAGGGTAGAA
  GGACGCTGCA TGGTTTCTCC TTCGTAGACA TACCCCAGGG TCCAGCCTCT CCAAGTTGCT
  CAGGAGCTAA TGTGAAATCA AGCCCTTCCC AGCAATGTTA AATAGAAGCT TCCTGTGTTC
  CCTTGAAGCT CCCACCTGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48016904	NES11894376	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs31112733					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48016904	NES11894376	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95310841 () rs orientation: forward

Symbol	Name	Function Class
AY512915	cDNA sequence AY512915	within coordinates
Gm53325	predicted gene, 53325	833 bp downstream
Rr635006	regulatory region 635006	960 bp proximal
Tssr62186	transcription start site region 62186	132 bp downstream