rs31109654 SNP Detail

Summary

• ID
  rs31109654
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:95312875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATGCAAG CTTGCAAACT
  GATCTGAGTT GAAAAAGAAA TTAATGACAA AATAGTAACA CTCAAACACC AGCAGCATCA
  GAAAACACAG GCGTACTGGG TAGTAATGGG TAGTACTGGG TAGTACTGGG AAATACTGGG
  AGTAGTGGAA GGGGCAGGTC AGCAACATTC CCCACAATAG GGGGAATTGA AATAAGGCTA
  Y
  ATTGCTCAAG TCCTCCTTTT ATTGAATTTT ACCATGAAGA TCTAATATTA TGATTTGGGA
  TAATTTGGGA GGGGCCCCAA TTAAAAAAAT GAGCACAGAT TGGCTTCTAA TGATAATTTC
  TTAGACATAG ATACTCTTTC TCACTGGAAA TAGGTCCCTG GGCTTAACAG TTTGAAATGT
  ACCTGCAGAT GTGAAGTACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48016954	NES11894249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31109654					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48016954	NES11894249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:95312875 () rs orientation: forward

Symbol	Name	Function Class
AY512915	cDNA sequence AY512915	1901 bp upstream
Gm53325	predicted gene, 53325	within coordinates
Rr635006	regulatory region 635006	679 bp distal
Tssr62186	transcription start site region 62186	1900 bp upstream