rs31102004 SNP Detail

Summary

• ID
  rs31102004
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19947645 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAGGAAGA GGATGAGAGG
  ATGACAGAAG GAGGAGCAAC TTTGGGGGAA GCTTTGTGCT GTGTAGTTTT AGACATCTGG
  TCTAGCATCA AGAGGTTACA GTTAAAGGAA TATAGTGGCT CCTTCCTGTA ATCCCAGAAT
  TTGGAAAGAA GAGGCAGGGA AATCAATTCC AAGACCATCC TTAGCCATAG AGAAAATTTA
  R
  AGAGATATAC AAAACAAAAA TAATTTGAAT GACTCCCTAT GCAACTAAGG CTGGCCATGA
  ATACCTGACC CTCTGCCTCT ATCTCTAGAG TGCTGGGGTT ATAGGCATAT GCCATACCCA
  GTTTAGTCTG CATTTTAAAA TGTCTATTTA AGGGGGGATG GGGAAGGCAG TGAAGGAGTA
  AGACAACAAC AACGGTACTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45500219	mCV24778448	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G	G
ss320680116	CHEV_3_19793481	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs31102004					SNP	G	G	A	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19947645 () rs orientation: forward

Symbol	Name	Function Class
4632415L05Rik	RIKEN cDNA 4632415L05 gene	1501 bp upstream
Cpgi13006	CpG island 13006	1077 bp proximal
Gm64742	predicted gene, 64742	1375 bp upstream
Rr574033	regulatory region 574033	885 bp proximal
Rr574034	regulatory region 574034	1316 bp proximal
Rr574035	regulatory region 574035	1386 bp proximal
Rr574036	regulatory region 574036	1542 bp proximal
Rr574037	regulatory region 574037	1553 bp proximal
Tssr28531	transcription start site region 28531	1374 bp upstream
Tssr28532	transcription start site region 28532	1422 bp upstream
Tssr28533	transcription start site region 28533	1615 bp upstream