rs31100525 SNP Detail

Summary

• ID
  rs31100525
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121086606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTTATTAT ATGTAAGTAC ACTGTAGTTG TCTTCAGACA
  CACCAGAAGA GGACGTCAGA TCTCGTTACG GATGGTTGTG AGCCACCATG TGGTTGCTGG
  R
  ATTTGAACTC AGGACCTTTG GAAGAGCAGT CAGTGCTCTT AACCGCTGAG CCATCTCACC
  AGCCCCTATA TTGTACTTTT TTATATTGCA GGCAGCACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss45498932	mCV23993263	ABI	CRAMUS_MOUSE	f	SNP	G	A
ss135717687	ENSMUSSNP1323791	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs31100525					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121086606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Alg14	asparagine-linked glycosylation 14			Intron
				Noncoding-Transcript-Variant
Cpgi13756	CpG island 13756			668 bp distal
Gm56787	predicted gene, 56787			1284 bp upstream
Rr367543	regulatory region 367543			1118 bp downstream
Rr584038	regulatory region 584038			1335 bp distal
Rr584039	regulatory region 584039			1120 bp distal
Rr584040	regulatory region 584040			1105 bp distal
Rr584041	regulatory region 584041			1319 bp proximal
Rr584042	regulatory region 584042			1439 bp proximal
Tssr31434	transcription start site region 31434			1140 bp downstream
Tssr31435	transcription start site region 31435			1125 bp downstream
Tssr31436	transcription start site region 31436			1095 bp downstream
Tssr35412	transcription start site region 35412			1343 bp upstream