rs31090513 SNP Detail

Summary

• ID
  rs31090513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138603487 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGAAAATGT GAACCGTCTG
  TATTGTAAGT GGAAAGCCAG AACTGAGTGG TAGTGTGCCC CGTGTGGGGA GTGGCTACTG
  CCCTTCTGGG ACAAGCCTGC CCATTGAGCA CAGTGGCGCA CAGTGGGTGC AGCGTCCCAC
  AGGCTCCCCC TCCTGCAAGG TTGGGGCTAT GCGGCTCTCT CGCGAGGCTT GGGTTTTAGG
  R
  TGTTGAGCTG CAGGCTGTGC AGGCTGCTCT TCTGGAGGGC GCAACAGCCT GGGCTGAGCG
  TCACTGAGAA CTGTGTCATC CTGCCTGTGA CTCCTTCCTA AACTTCCTAG CTTGCCTTCC
  TCCTCTGAGG CGGCTCAAGC TGCAGCAGGA TATCCAGCCT GGAAGCCATG GTACCCAGCA
  TAATGTGCTT GCTGGTGGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45496948	mCV23601329	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss135958104	ENSMUSSNP6359768	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss320981848	CHEV_3_138560690	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs31090513					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138603487 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr586227	regulatory region 586227			40 bp distal
Tspan5	tetraspanin 5			Intron
				Noncoding-Transcript-Variant