rs31070689 SNP Detail

Summary

• ID
  rs31070689
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCGA ACTCCTCACA AGTTCTCTGG
  Y
  AAAAATCTGG AACTTCCCGG GTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47013019	NES10856629	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C	T	C	C	T
ss136016116	ENSMUSSNP3065849	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31070689					SNP	C	C	C	C	C	C	C	T	T	C	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013019	NES10856629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326422 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	mRNA-UTR
Gbp2b	guanylate binding protein 2b	1482 bp downstream
Gm54185	predicted gene, 54185	1379 bp upstream
Rr398088	regulatory region 398088	478 bp downstream
Rr586457	regulatory region 586457	1685 bp distal
Rr586458	regulatory region 586458	49 bp distal
Rr586459	regulatory region 586459	within coordinates
Tssr32225	transcription start site region 32225	1810 bp downstream
Tssr32226	transcription start site region 32226	1770 bp downstream
Tssr32227	transcription start site region 32227	34 bp downstream
Tssr32228	transcription start site region 32228	within coordinates
Tssr32229	transcription start site region 32229	25 bp upstream
Tssr32230	transcription start site region 32230	61 bp upstream
Tssr32231	transcription start site region 32231	78 bp upstream
Tssr32232	transcription start site region 32232	612 bp upstream
Tssr35947	transcription start site region 35947	1480 bp upstream