rs31070687 SNP Detail

Summary

• ID
  rs31070687
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142326128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTATTTTT ATTCTTTCAC AGTACAGAGA AATGATTTTT
  AAACGATTCA TGTCCACTTC TGAATTGCAC AATTGCTTGC TAACTTTGTG TAACACAGTG
  R
  GGCTGGCAAC TTCACAAAAC AAACACTAAT GGACAAAAAA GGACTGAAAC ATAAGAGAAT
  GATTTCAAAA CCACACCCTT TTCACCCTAC ATTTTGAAAC                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47013017	NES10856628	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs31070687					SNP	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47013017	NES10856628	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142326128 () rs orientation: forward

Symbol	Name	Function Class
Gbp2	guanylate binding protein 2	296 bp upstream
Gbp2b	guanylate binding protein 2b	1188 bp downstream
Gm54185	predicted gene, 54185	1085 bp upstream
Rr398088	regulatory region 398088	184 bp downstream
Rr586457	regulatory region 586457	1391 bp distal
Rr586458	regulatory region 586458	within coordinates
Rr586459	regulatory region 586459	246 bp proximal
Tssr32222	transcription start site region 32222	1965 bp downstream
Tssr32223	transcription start site region 32223	1908 bp downstream
Tssr32224	transcription start site region 32224	1854 bp downstream
Tssr32225	transcription start site region 32225	1516 bp downstream
Tssr32226	transcription start site region 32226	1476 bp downstream
Tssr32227	transcription start site region 32227	229 bp upstream
Tssr32228	transcription start site region 32228	280 bp upstream
Tssr32229	transcription start site region 32229	319 bp upstream
Tssr32230	transcription start site region 32230	355 bp upstream
Tssr32231	transcription start site region 32231	372 bp upstream
Tssr32232	transcription start site region 32232	906 bp upstream
Tssr35947	transcription start site region 35947	1186 bp upstream